# Scripts

Fishtank provides a number command line scripts to help with common tasks. These scripts are installed when you install fishtank. You can see the list of available scripts by running `fishtank --help`.

```{eval-rst}
.. module:: fishtank.scripts
.. currentmodule:: fishtank

.. autosummary::
    :toctree: generated

    scripts.align_experiments
    scripts.aggregate_polygons
    scripts.assign_proseg
    scripts.assign_spots
    scripts.cellpose
    scripts.decode_spots
    scripts.detect_spots
    scripts.fovs
```