Changelog

Changelog#

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]#

Added#

Changed#

Fixes#

[0.3.7]#

Fixes#

  • Fix IndexError when reading ImageJ hyperstacks stored as a single physical TIFF page (e.g. contiguous multi-frame files from some microscope acquisitions). Falls back to tif.asarray() when tif.pages has fewer entries than the requested frame index.

[0.1.1]#

Added#

Changed#

  • Strategy is now optional for decode_spots

Fixes#

  • aggregate_polygons now works when no FOVs overlap

[0.1.0]#

Added#

  • Support for Zhuang lab XML format

  • Switched to Cellpose>=4.0.0 to use SAM model

Changed#

  • “nuclei” and “cyto” models are no longer supported, use “cpsam” instead

Fixes#

[0.0.1]#

Added#

  • Basic tool, preprocessing and plotting functions

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