fishtank.correct.illumination

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fishtank.correct.illumination#

fishtank.correct.illumination(img, colors, corr_path, transpose=True, flip=True)#

Correct image illumination.

Parameters:

  • img (ndarray) – A (Y,X), (C,Y,X) or (C,Z,Y,X) image.

  • colors (list | ndarray | int) – A list of channel colors. Must be the same length as the number of channels in the image.

  • corr_path (str | Path) – The path to the illumination correction file.

  • transpose (bool (default: True)) – Whether to transpose the correction matrix.

  • flip (bool (default: True)) – Whether to flip the correction matrix.

Return type:

ndarray

Returns:

corrected a numpy array of the same shape and dtype as the input image.

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