fishtank

A collection of tools for processing MERFISH data

Getting started

Please refer to the documentation, in particular, the API documentation.

Installation

You need to have Python 3.10 or newer installed on your system. If you don’t have Python installed, we recommend installing Mambaforge.

Install the latest version:

pip install git+https://github.com/jweissmanlab/fishtank.git@main

Configuration

To use fishtank.filters.deconwolf install deconwolf then set the dw_path and dw_psf_path attributes in the .config.ini file.

Release notes

See the changelog.

Contact

If you found a bug, please use the issue tracker.