Index

A

aggregate_polygons() (in module fishtank.scripts) align_experiments() (in module fishtank.scripts)

assign_proseg() (in module fishtank.scripts) assign_spots() (in module fishtank.scripts) (in module fishtank.seg)

C

cellpose() (in module fishtank.scripts)

color_normalization() (in module fishtank.correct) create_mosaic() (in module fishtank.utils)

D

decode_spots() (in module fishtank.scripts) deconwolf() (in module fishtank.filters)

detect_spots() (in module fishtank.scripts) determine_fov_format() (in module fishtank.utils)

E

expectation_maximization() (in module fishtank.decode)

F

fishtank.correct module fishtank.decode module fishtank.filters module fishtank.io module fishtank.pl module

fishtank.scripts module fishtank.seg module fishtank.utils module fix_overlaps() (in module fishtank.seg) fovs() (in module fishtank.scripts)

I

illumination() (in module fishtank.correct)

imshow() (in module fishtank.pl)

L

list_fovs() (in module fishtank.io)

logistic_regression() (in module fishtank.decode)

M

masks_to_polygons() (in module fishtank.seg) module fishtank.correct fishtank.decode fishtank.filters fishtank.io fishtank.pl fishtank.scripts fishtank.seg fishtank.utils

P

polygon_properties() (in module fishtank.seg)

polygons_to_masks() (in module fishtank.seg)

R

read_color_usage() (in module fishtank.io) read_dax() (in module fishtank.io) read_fov() (in module fishtank.io)

read_img() (in module fishtank.io) read_mosaic() (in module fishtank.io) read_xml() (in module fishtank.io)

S

spot_alignment() (in module fishtank.correct)

spot_intensities() (in module fishtank.decode)

T

tile_image() (in module fishtank.utils)

tile_polygons() (in module fishtank.utils)

U

unsharp_mask() (in module fishtank.filters)