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fishtank
API
fishtank.io.read_img
fishtank.io.read_fov
fishtank.io.read_mosaic
fishtank.io.list_fovs
fishtank.io.read_dax
fishtank.io.read_xml
fishtank.io.read_color_usage
fishtank.pl.imshow
fishtank.correct.illumination
fishtank.correct.color_normalization
fishtank.correct.spot_alignment
fishtank.filters.deconwolf
fishtank.filters.unsharp_mask
fishtank.decode.spot_intensities
fishtank.decode.expectation_maximization
fishtank.decode.logistic_regression
fishtank.seg.masks_to_polygons
fishtank.seg.polygons_to_masks
fishtank.seg.fix_overlaps
fishtank.seg.polygon_properties
fishtank.seg.assign_spots
fishtank.utils.tile_polygons
fishtank.utils.tile_image
fishtank.utils.create_mosaic
fishtank.utils.determine_fov_format
Scripts
fishtank.scripts.align_experiments
fishtank.scripts.aggregate_polygons
fishtank.scripts.assign_proseg
fishtank.scripts.assign_spots
fishtank.scripts.cellpose
fishtank.scripts.decode_spots
fishtank.scripts.detect_spots
fishtank.scripts.fovs
Changelog
Contributing guide
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